J5_1QVF_006

3D structure

PDB id

1QVF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a deacylated tRNA minihelix bound to the E site of the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCAAGUUAG*UG*UC*GUGACUCGG*CAC

Length

25 nucleotides

Bulged bases

1QVF|1|0|G|1814, 1QVF|1|0|G|1819

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_1QVF_006 not in the Motif Atlas

Homologous match to J5_4V9F_006

Geometric discrepancy: 0.0274

The information below is about J5_4V9F_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_99177.1

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

10

Unit IDs

1QVF|1|0|G|1752
1QVF|1|0|C|1753
1QVF|1|0|A|1754
1QVF|1|0|A|1755
1QVF|1|0|G|1756
1QVF|1|0|U|1757
1QVF|1|0|U|1758
1QVF|1|0|A|1759
1QVF|1|0|G|1760
*
1QVF|1|0|U|1784
1QVF|1|0|G|1785
*
1QVF|1|0|U|1807
1QVF|1|0|C|1808
*
1QVF|1|0|G|1812
1QVF|1|0|U|1813
1QVF|1|0|G|1814
1QVF|1|0|A|1815
1QVF|1|0|C|1816
1QVF|1|0|U|1817
1QVF|1|0|C|1818
1QVF|1|0|G|1819
1QVF|1|0|G|1820
*
1QVF|1|0|C|2029
1QVF|1|0|A|2030
1QVF|1|0|C|2031

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain B

50S ribosomal protein L3P

Chain J

50S ribosomal protein L14P

Chain O

50S ribosomal protein L19E