J5_1SM1_005

3D structure

PDB id

1SM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AUG

Length

22 nucleotides

Bulged bases

1SM1|1|0|U|49, 1SM1|1|0|G|50, 1SM1|1|0|U|154

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_1SM1_005 not in the Motif Atlas

Homologous match to J5_4WF9_001

Geometric discrepancy: 0.3791

The information below is about J5_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

1SM1|1|0|C|46
1SM1|1|0|G|47
1SM1|1|0|A|48
1SM1|1|0|U|49
1SM1|1|0|G|50
1SM1|1|0|A|51
1SM1|1|0|A|52
1SM1|1|0|G|53
*
1SM1|1|0|C|114
1SM1|1|0|G|115
1SM1|1|0|A|116
1SM1|1|0|A|117
1SM1|1|0|U|118
1SM1|1|0|G|119
*
1SM1|1|0|C|128
1SM1|1|0|A|129
*
1SM1|1|0|U|142
1SM1|1|0|A|143
1SM1|1|0|U|144
*
1SM1|1|0|A|153
1SM1|1|0|U|154
1SM1|1|0|G|155

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 2

50S RIBOSOMAL PROTEIN L34

Chain R

50S RIBOSOMAL PROTEIN L23