J5_1VQ9_003
3D structure
- PDB id
- 1VQ9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of CCA-PHE-CAP-BIO and the antibiotic sparsomycin bound to the large ribosomal subunit of haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.4 Å
Loop
- Sequence
- GGAGUG*CGAC*GUUC*GC*GAAAAUC
- Length
- 23 nucleotides
- Bulged bases
- 1VQ9|1|0|U|1359
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_1VQ9_003 not in the Motif Atlas
- Homologous match to J5_4V9F_003
- Geometric discrepancy: 0.0282
- The information below is about J5_4V9F_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_15067.1
- Basepair signature
- cWW-tSH-tSS-tHH-F-F-F-tWS-cWW-cWW-F-cWW-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
1VQ9|1|0|G|641
1VQ9|1|0|G|642
1VQ9|1|0|A|643
1VQ9|1|0|G|644
1VQ9|1|0|U|645
1VQ9|1|0|G|646
*
1VQ9|1|0|C|759
1VQ9|1|0|G|760
1VQ9|1|0|A|761
1VQ9|1|0|C|762
*
1VQ9|1|0|G|902
1VQ9|1|0|U|903
1VQ9|1|0|U|904
1VQ9|1|0|C|905
*
1VQ9|1|0|G|1300
1VQ9|1|0|C|1301
*
1VQ9|1|0|G|1354
1VQ9|1|0|A|1355
1VQ9|1|0|A|1356
1VQ9|1|0|A|1357
1VQ9|1|0|A|1358
1VQ9|1|0|U|1359
1VQ9|1|0|C|1360
Current chains
- Chain 0
- 23S ribosomal rna
Nearby chains
- Chain C
- 50S ribosomal protein L4E
- Chain L
- 50S ribosomal protein L15P
- Chain Y
- 50S ribosomal protein L32E
Coloring options: