J5_1VQK_002
3D structure
- PDB id
- 1VQK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of CCDA-PHE-CAP-BIO bound to the a site of the ribosomal subunit of haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.3 Å
Loop
- Sequence
- GCG*CGUAC*GAG*CC*GU
- Length
- 15 nucleotides
- Bulged bases
- 1VQK|1|0|U|619
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_1VQK_002 not in the Motif Atlas
- Homologous match to J5_4V9F_002
- Geometric discrepancy: 0.0354
- The information below is about J5_4V9F_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.6
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
1VQK|1|0|G|537
1VQK|1|0|C|538
1VQK|1|0|G|539
*
1VQK|1|0|C|617
1VQK|1|0|G|618
1VQK|1|0|U|619
1VQK|1|0|A|620
1VQK|1|0|C|621
*
1VQK|1|0|G|634
1VQK|1|0|A|635
1VQK|1|0|G|636
*
1VQK|1|0|C|1365
1VQK|1|0|C|1366
*
1VQK|1|0|G|2058
1VQK|1|0|U|2059
Current chains
- Chain 0
- 23S ribosomal rna
Nearby chains
- Chain C
- 50S ribosomal protein L4E
- Chain J
- 50S ribosomal protein L13P
- Chain R
- 50S ribosomal protein L22P
- Chain Y
- 50S ribosomal protein L32E
Coloring options: