3D structure

PDB id
1VQO (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structure of CCPMN bound to the large ribosomal subunit haloarcula marismortui
Experimental method
X-RAY DIFFRACTION
Resolution
2.2 Å

Loop

Sequence
GGAGUG*CGAC*GUUC*GC*GAAAAUC
Length
23 nucleotides
Bulged bases
1VQO|1|0|U|1359
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_1VQO_003 not in the Motif Atlas
Homologous match to J5_4V9F_003
Geometric discrepancy: 0.0271
The information below is about J5_4V9F_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_56920.1
Basepair signature
cWW-tSH-tSS-tHH-F-F-F-tWS-cWW-cWW-F-cWW-cWW-F-F
Number of instances in this motif group
1

Unit IDs

1VQO|1|0|G|641
1VQO|1|0|G|642
1VQO|1|0|A|643
1VQO|1|0|G|644
1VQO|1|0|U|645
1VQO|1|0|G|646
*
1VQO|1|0|C|759
1VQO|1|0|G|760
1VQO|1|0|A|761
1VQO|1|0|C|762
*
1VQO|1|0|G|902
1VQO|1|0|U|903
1VQO|1|0|U|904
1VQO|1|0|C|905
*
1VQO|1|0|G|1300
1VQO|1|0|C|1301
*
1VQO|1|0|G|1354
1VQO|1|0|A|1355
1VQO|1|0|A|1356
1VQO|1|0|A|1357
1VQO|1|0|A|1358
1VQO|1|0|U|1359
1VQO|1|0|C|1360

Current chains

Chain 0
23S ribosomal rna

Nearby chains

Chain C
50S ribosomal protein L4E
Chain L
50S ribosomal protein L15P
Chain Y
50S ribosomal protein L32E

Coloring options:


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