J5_1VX6_002

3D structure

PDB id

1VX6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit (RNA only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAGUC*GGAC*GUUA*UC*GCAGAUC

Length

23 nucleotides

Bulged bases

1VX6|1|A|U|1585

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX6|1|A|G|736
1VX6|1|A|G|737
1VX6|1|A|A|738
1VX6|1|A|G|739
1VX6|1|A|U|740
1VX6|1|A|C|741
*
1VX6|1|A|G|918
1VX6|1|A|G|919
1VX6|1|A|A|920
1VX6|1|A|C|921
*
1VX6|1|A|G|1060
1VX6|1|A|U|1061
1VX6|1|A|U|1062
1VX6|1|A|A|1063
*
1VX6|1|A|U|1524
1VX6|1|A|C|1525
*
1VX6|1|A|G|1580
1VX6|1|A|C|1581
1VX6|1|A|A|1582
1VX6|1|A|G|1583
1VX6|1|A|A|1584
1VX6|1|A|U|1585
1VX6|1|A|C|1586

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain C

5.8S ribosomal RNA; 5.8S rRNA