J5_1VY4_012
3D structure
- PDB id
- 1VY4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CGAUGAAG*CGAAUG*CG*CAC*GGG
- Length
- 22 nucleotides
- Bulged bases
- 1VY4|1|DA|U|50
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_1VY4_012 not in the Motif Atlas
- Homologous match to J5_9DFE_001
- Geometric discrepancy: 0.0564
- The information below is about J5_9DFE_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_01737.2
- Basepair signature
- cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
1VY4|1|DA|C|47
1VY4|1|DA|G|48
1VY4|1|DA|A|49
1VY4|1|DA|U|50
1VY4|1|DA|G|51
1VY4|1|DA|A|52
1VY4|1|DA|A|53
1VY4|1|DA|G|54
*
1VY4|1|DA|C|116
1VY4|1|DA|G|117
1VY4|1|DA|A|118
1VY4|1|DA|A|119
1VY4|1|DA|U|120
1VY4|1|DA|G|121
*
1VY4|1|DA|C|130
1VY4|1|DA|G|131
*
1VY4|1|DA|C|148
1VY4|1|DA|A|149
1VY4|1|DA|C|150
*
1VY4|1|DA|G|176
1VY4|1|DA|G|177
1VY4|1|DA|G|178
Current chains
- Chain DA
- 23S Ribosomal RNA
Nearby chains
- Chain D7
- 50S ribosomal protein L34
- Chain DX
- 50S ribosomal protein L23
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