J5_1VY7_011
3D structure
- PDB id
- 1VY7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 1VY7|1|CA|A|109, 1VY7|1|CA|C|352
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_1VY7_011 not in the Motif Atlas
- Homologous match to J5_4LFB_002
- Geometric discrepancy: 0.1005
- The information below is about J5_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_58574.1
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
1VY7|1|CA|C|58
1VY7|1|CA|A|59
1VY7|1|CA|A|60
1VY7|1|CA|G|61
*
1VY7|1|CA|C|106
1VY7|1|CA|G|107
1VY7|1|CA|G|108
1VY7|1|CA|A|109
1VY7|1|CA|C|110
1VY7|1|CA|G|111
1VY7|1|CA|G|112
1VY7|1|CA|G|113
*
1VY7|1|CA|C|314
1VY7|1|CA|A|315
1VY7|1|CA|G|316
*
1VY7|1|CA|C|337
1VY7|1|CA|A|338
1VY7|1|CA|C|339
*
1VY7|1|CA|G|350
1VY7|1|CA|G|351
1VY7|1|CA|C|352
1VY7|1|CA|A|353
1VY7|1|CA|G|354
Current chains
- Chain CA
- 16S Ribosomal RNA
Nearby chains
- Chain CP
- 30S ribosomal protein S16
- Chain CT
- 30S ribosomal protein S20
- Chain DO
- 50S ribosomal protein L14
- Chain DT
- 50S ribosomal protein L19
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