J5_1XMO_001

3D structure

PDB id

1XMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of mnm5U34t6A37-tRNALysUUU Complexed with AAG-mRNA in the Decoding Center

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CAAG*CGGACGGG*CAG*CAC*GGCAG

Length

23 nucleotides

Bulged bases

1XMO|1|A|A|109, 1XMO|1|A|C|352

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_1XMO_001 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.0518

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_58574.1

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

1XMO|1|A|C|58
1XMO|1|A|A|59
1XMO|1|A|A|60
1XMO|1|A|G|61
*
1XMO|1|A|C|106
1XMO|1|A|G|107
1XMO|1|A|G|108
1XMO|1|A|A|109
1XMO|1|A|C|110
1XMO|1|A|G|111
1XMO|1|A|G|112
1XMO|1|A|G|113
*
1XMO|1|A|C|314
1XMO|1|A|A|315
1XMO|1|A|G|316
*
1XMO|1|A|C|337
1XMO|1|A|A|338
1XMO|1|A|C|339
*
1XMO|1|A|G|350
1XMO|1|A|G|351
1XMO|1|A|C|352
1XMO|1|A|A|353
1XMO|1|A|G|354

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20