J5_1YJ9_006

3D structure

PDB id

1YJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of The Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui Containing a three residue deletion in L22

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GCAAGUUAG*UG*UC*GUGACUCGG*CAC

Length

25 nucleotides

Bulged bases

1YJ9|1|0|G|1814, 1YJ9|1|0|G|1819

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_1YJ9_006 not in the Motif Atlas

Homologous match to J5_4V9F_006

Geometric discrepancy: 0.0419

The information below is about J5_4V9F_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_99177.1

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

10

Unit IDs

1YJ9|1|0|G|1752
1YJ9|1|0|C|1753
1YJ9|1|0|A|1754
1YJ9|1|0|A|1755
1YJ9|1|0|G|1756
1YJ9|1|0|U|1757
1YJ9|1|0|U|1758
1YJ9|1|0|A|1759
1YJ9|1|0|G|1760
*
1YJ9|1|0|U|1784
1YJ9|1|0|G|1785
*
1YJ9|1|0|U|1807
1YJ9|1|0|C|1808
*
1YJ9|1|0|G|1812
1YJ9|1|0|U|1813
1YJ9|1|0|G|1814
1YJ9|1|0|A|1815
1YJ9|1|0|C|1816
1YJ9|1|0|U|1817
1YJ9|1|0|C|1818
1YJ9|1|0|G|1819
1YJ9|1|0|G|1820
*
1YJ9|1|0|C|2029
1YJ9|1|0|A|2030
1YJ9|1|0|C|2031

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3P

Chain K

50S ribosomal protein L14P

Chain P

50S ribosomal protein L19E