J5_1YJW_006

3D structure

PDB id

1YJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of Quinupristin Bound To The G2099A Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GCAAGUUAG*UG*UC*GUGACUCGG*CAC

Length

25 nucleotides

Bulged bases

1YJW|1|0|G|1814, 1YJW|1|0|G|1819

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_1YJW_006 not in the Motif Atlas

Homologous match to J5_4V9F_006

Geometric discrepancy: 0.0355

The information below is about J5_4V9F_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_99177.1

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

10

Unit IDs

1YJW|1|0|G|1752
1YJW|1|0|C|1753
1YJW|1|0|A|1754
1YJW|1|0|A|1755
1YJW|1|0|G|1756
1YJW|1|0|U|1757
1YJW|1|0|U|1758
1YJW|1|0|A|1759
1YJW|1|0|G|1760
*
1YJW|1|0|U|1784
1YJW|1|0|G|1785
*
1YJW|1|0|U|1807
1YJW|1|0|C|1808
*
1YJW|1|0|G|1812
1YJW|1|0|U|1813
1YJW|1|0|G|1814
1YJW|1|0|A|1815
1YJW|1|0|C|1816
1YJW|1|0|U|1817
1YJW|1|0|C|1818
1YJW|1|0|G|1819
1YJW|1|0|G|1820
*
1YJW|1|0|C|2029
1YJW|1|0|A|2030
1YJW|1|0|C|2031

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain B

50S RIBOSOMAL PROTEIN L3P

Chain K

50S RIBOSOMAL PROTEIN L14P

Chain P

50S RIBOSOMAL PROTEIN L19E