J5_23WI_003
3D structure
- PDB id
- 23WI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GCAAAAUGG*CG*UC*GAUACCAGC*GGC
- Length
- 25 nucleotides
- Bulged bases
- 23WI|1|5|U|1758, 23WI|1|5|G|1763
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_23WI_003 not in the Motif Atlas
- Homologous match to J5_7A0S_005
- Geometric discrepancy: 0.259
- The information below is about J5_7A0S_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.3
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 11
Unit IDs
23WI|1|5|G|1674
23WI|1|5|C|1675
23WI|1|5|A|1676
23WI|1|5|A|1677
23WI|1|5|A|1678
23WI|1|5|A|1679
23WI|1|5|U|1680
23WI|1|5|G|1681
23WI|1|5|G|1682
*
23WI|1|5|C|1706
23WI|1|5|G|1707
*
23WI|1|5|U|1751
23WI|1|5|C|1752
*
23WI|1|5|G|1756
23WI|1|5|A|1757
23WI|1|5|U|1758
23WI|1|5|A|1759
23WI|1|5|C|1760
23WI|1|5|C|1761
23WI|1|5|A|1762
23WI|1|5|G|1763
23WI|1|5|C|1764
*
23WI|1|5|G|1988
23WI|1|5|G|1989
23WI|1|5|C|1990
Current chains
- Chain 5
- RNA (2014-MER)
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain D
- Large ribosomal subunit protein uL3
- Chain K
- Large ribosomal subunit protein uL14
- Chain P
- 50S ribosomal protein L19
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: