J5_23WI_005
3D structure
- PDB id
- 23WI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- UUUA*UUUG*CU*AG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 23WI|1|5|U|2076, 23WI|1|5|G|2428, 23WI|1|5|G|2429, 23WI|1|5|A|2430, 23WI|1|5|U|2431
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_23WI_005 not in the Motif Atlas
- Homologous match to J5_7A0S_007
- Geometric discrepancy: 0.1297
- The information below is about J5_7A0S_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
23WI|1|5|U|2074
23WI|1|5|U|2075
23WI|1|5|U|2076
23WI|1|5|A|2077
*
23WI|1|5|U|2243
23WI|1|5|U|2244
23WI|1|5|U|2245
23WI|1|5|G|2246
*
23WI|1|5|C|2258
23WI|1|5|U|2259
*
23WI|1|5|A|2281
23WI|1|5|G|2282
*
23WI|1|5|C|2427
23WI|1|5|G|2428
23WI|1|5|G|2429
23WI|1|5|A|2430
23WI|1|5|U|2431
23WI|1|5|A|2432
23WI|1|5|A|2433
23WI|1|5|A|2434
23WI|1|5|A|2435
Current chains
- Chain 5
- RNA (2014-MER)
Nearby chains
- Chain 1
- 50S ribosomal protein L33
- Chain 3
- 50S ribosomal protein L35
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain C
- Large ribosomal subunit protein uL2
- Chain L
- Large ribosomal subunit protein uL15
- Chain W
- 50S ribosomal protein L27
- Chain X
- 50S ribosomal protein L28
Coloring options: