J5_23WI_006

3D structure

PDB id

23WI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

23WI|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_23WI_006 not in the Motif Atlas

Homologous match to J5_8B0X_004

Geometric discrepancy: 0.0859

The information below is about J5_8B0X_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.3

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-tWW-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

23WI|1|A|C|47
23WI|1|A|G|48
23WI|1|A|A|49
23WI|1|A|U|50
23WI|1|A|G|51
23WI|1|A|A|52
23WI|1|A|A|53
23WI|1|A|G|54
*
23WI|1|A|C|116
23WI|1|A|G|117
23WI|1|A|A|118
23WI|1|A|A|119
23WI|1|A|U|120
23WI|1|A|G|121
*
23WI|1|A|C|130
23WI|1|A|A|131
*
23WI|1|A|U|148
23WI|1|A|A|149
23WI|1|A|U|150
*
23WI|1|A|A|176
23WI|1|A|G|177
23WI|1|A|G|178

Current chains

Chain A

16S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain 5

Large subunit ribosomal RNA; LSU rRNA