J5_23WI_009

3D structure

PDB id

23WI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

23WI|1|a|A|109, 23WI|1|a|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_23WI_009 not in the Motif Atlas

Homologous match to J5_6CZR_021

Geometric discrepancy: 0.2399

The information below is about J5_6CZR_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.5

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

23WI|1|a|C|58
23WI|1|a|A|59
23WI|1|a|A|60
23WI|1|a|G|61
*
23WI|1|a|C|106
23WI|1|a|G|107
23WI|1|a|G|108
23WI|1|a|A|109
23WI|1|a|C|110
23WI|1|a|G|111
23WI|1|a|G|112
23WI|1|a|G|113
*
23WI|1|a|C|314
23WI|1|a|A|315
23WI|1|a|C|316
*
23WI|1|a|G|337
23WI|1|a|A|338
23WI|1|a|C|339
*
23WI|1|a|G|350
23WI|1|a|G|351
23WI|1|a|C|352
23WI|1|a|A|353
23WI|1|a|G|354

Current chains

Chain a

RNA (1539-MER)

Nearby chains

Chain K

Large ribosomal subunit protein uL14

Chain P

50S ribosomal protein L19

Chain p

30S ribosomal protein S16

Chain t

Small ribosomal subunit protein bS20