J5_2J28_004

3D structure

PDB id

2J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

MODEL OF E. COLI SRP BOUND TO 70S RNCS

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

2J28|1|B|U|1758, 2J28|1|B|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_2J28_004 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.0568

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

2J28|1|B|G|1674
2J28|1|B|C|1675
2J28|1|B|A|1676
2J28|1|B|A|1677
2J28|1|B|A|1678
2J28|1|B|A|1679
2J28|1|B|U|1680
2J28|1|B|G|1681
2J28|1|B|G|1682
*
2J28|1|B|C|1706
2J28|1|B|G|1707
*
2J28|1|B|U|1751
2J28|1|B|C|1752
*
2J28|1|B|G|1756
2J28|1|B|A|1757
2J28|1|B|U|1758
2J28|1|B|A|1759
2J28|1|B|C|1760
2J28|1|B|C|1761
2J28|1|B|A|1762
2J28|1|B|G|1763
2J28|1|B|C|1764
*
2J28|1|B|G|1988
2J28|1|B|G|1989
2J28|1|B|C|1990

Current chains

Chain B

23S RIBOSOMAL RNA

Nearby chains

Chain D

50S RIBOSOMAL PROTEIN L3

Chain K

50S RIBOSOMAL PROTEIN L14

Chain P

50S RIBOSOMAL PROTEIN L19