J5_2OGO_007

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UA*UG

Length

20 nucleotides

Bulged bases

2OGO|1|0|U|49

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_2OGO_007 not in the Motif Atlas

Homologous match to J5_7A0S_001

Geometric discrepancy: 0.2198

The information below is about J5_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_75459.1

Basepair signature

cWW-F-cWW-cHW-tSH-cWW-tHH-tHS-cWW-cWW

Number of instances in this motif group

2

Unit IDs

2OGO|1|0|C|46
2OGO|1|0|G|47
2OGO|1|0|A|48
2OGO|1|0|U|49
2OGO|1|0|G|50
2OGO|1|0|A|51
2OGO|1|0|A|52
2OGO|1|0|G|53
*
2OGO|1|0|C|114
2OGO|1|0|G|115
2OGO|1|0|A|116
2OGO|1|0|A|117
2OGO|1|0|U|118
2OGO|1|0|G|119
*
2OGO|1|0|C|128
2OGO|1|0|A|129
*
2OGO|1|0|U|142
2OGO|1|0|A|143
*
2OGO|1|0|U|154
2OGO|1|0|G|155

Current chains

Chain 0

23S ribosomal RNA

Nearby chains