J5_2OTJ_003
3D structure
- PDB id
- 2OTJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 13-deoxytedanolide bound to the large subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- GGAGUG*CGAC*GUUC*GC*GAAAAUC
- Length
- 23 nucleotides
- Bulged bases
- 2OTJ|1|0|U|1359
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_2OTJ_003 not in the Motif Atlas
- Homologous match to J5_4V9F_003
- Geometric discrepancy: 0.0246
- The information below is about J5_4V9F_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_15067.1
- Basepair signature
- cWW-tSH-tSS-tHH-F-F-F-tWS-cWW-cWW-F-cWW-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
2OTJ|1|0|G|641
2OTJ|1|0|G|642
2OTJ|1|0|A|643
2OTJ|1|0|G|644
2OTJ|1|0|U|645
2OTJ|1|0|G|646
*
2OTJ|1|0|C|759
2OTJ|1|0|G|760
2OTJ|1|0|A|761
2OTJ|1|0|C|762
*
2OTJ|1|0|G|902
2OTJ|1|0|U|903
2OTJ|1|0|U|904
2OTJ|1|0|C|905
*
2OTJ|1|0|G|1300
2OTJ|1|0|C|1301
*
2OTJ|1|0|G|1354
2OTJ|1|0|A|1355
2OTJ|1|0|A|1356
2OTJ|1|0|A|1357
2OTJ|1|0|A|1358
2OTJ|1|0|U|1359
2OTJ|1|0|C|1360
Current chains
- Chain 0
- 23S ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L4P
- Chain L
- 50S ribosomal protein L15P
- Chain Y
- 50S ribosomal protein L32e
Coloring options: