J5_2ZJP_004

3D structure

PDB id

2ZJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GCAAUCUCA*UC*GC*GUGAAUAGG*CGC

Length

25 nucleotides

Bulged bases

2ZJP|1|X|G|1749, 2ZJP|1|X|G|1754

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_2ZJP_004 not in the Motif Atlas

Homologous match to J5_7A0S_005

Geometric discrepancy: 0.1786

The information below is about J5_7A0S_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_99177.2

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

11

Unit IDs

2ZJP|1|X|G|1691
2ZJP|1|X|C|1692
2ZJP|1|X|A|1693
2ZJP|1|X|A|1694
2ZJP|1|X|U|1695
2ZJP|1|X|C|1696
2ZJP|1|X|U|1697
2ZJP|1|X|C|1698
2ZJP|1|X|A|1699
*
2ZJP|1|X|U|1723
2ZJP|1|X|C|1724
*
2ZJP|1|X|G|1742
2ZJP|1|X|C|1743
*
2ZJP|1|X|G|1747
2ZJP|1|X|U|1748
2ZJP|1|X|G|1749
2ZJP|1|X|A|1750
2ZJP|1|X|A|1751
2ZJP|1|X|U|1752
2ZJP|1|X|A|1753
2ZJP|1|X|G|1754
2ZJP|1|X|G|1755
*
2ZJP|1|X|C|1971
2ZJP|1|X|G|1972
2ZJP|1|X|C|1973

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain B

50S RIBOSOMAL PROTEIN L3

Chain H

50S RIBOSOMAL PROTEIN L14

Chain M

50S RIBOSOMAL PROTEIN L19