J5_2ZM6_002

3D structure

PDB id

2ZM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAAG*CGGACGGG*CAG*CAC*GGCAG

Length

23 nucleotides

Bulged bases

2ZM6|1|A|A|109, 2ZM6|1|A|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_2ZM6_002 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.0869

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_58574.1

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

2ZM6|1|A|C|58
2ZM6|1|A|A|59
2ZM6|1|A|A|60
2ZM6|1|A|G|61
*
2ZM6|1|A|C|106
2ZM6|1|A|G|107
2ZM6|1|A|G|108
2ZM6|1|A|A|109
2ZM6|1|A|C|110
2ZM6|1|A|G|111
2ZM6|1|A|G|112
2ZM6|1|A|G|113
*
2ZM6|1|A|C|314
2ZM6|1|A|A|315
2ZM6|1|A|G|316
*
2ZM6|1|A|C|337
2ZM6|1|A|A|338
2ZM6|1|A|C|339
*
2ZM6|1|A|G|350
2ZM6|1|A|G|351
2ZM6|1|A|C|352
2ZM6|1|A|A|353
2ZM6|1|A|G|354

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20