3D structure

PDB id
3BBX (explore in PDB, NAKB, or RNA 3D Hub)
Description
The Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex
Experimental method
ELECTRON MICROSCOPY
Resolution
10 Å

Loop

Sequence
CGACUU*AGAC*GUUC*GC*GCGAAUG
Length
23 nucleotides
Bulged bases
3BBX|1|B|C|587, 3BBX|1|B|G|669, 3BBX|1|B|A|670, 3BBX|1|B|U|1255
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_3BBX_002 not in the Motif Atlas
Homologous match to J5_9DFE_004
Geometric discrepancy: 0.3734
The information below is about J5_9DFE_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_74302.5
Basepair signature
cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
Number of instances in this motif group
4

Unit IDs

3BBX|1|B|C|584
3BBX|1|B|G|585
3BBX|1|B|A|586
3BBX|1|B|C|587
3BBX|1|B|U|588
3BBX|1|B|U|589
*
3BBX|1|B|A|668
3BBX|1|B|G|669
3BBX|1|B|A|670
3BBX|1|B|C|671
*
3BBX|1|B|G|809
3BBX|1|B|U|810
3BBX|1|B|U|811
3BBX|1|B|C|812
*
3BBX|1|B|G|1195
3BBX|1|B|C|1196
*
3BBX|1|B|G|1250
3BBX|1|B|C|1251
3BBX|1|B|G|1252
3BBX|1|B|A|1253
3BBX|1|B|A|1254
3BBX|1|B|U|1255
3BBX|1|B|G|1256

Current chains

Chain B
23S ribosomal RNA

Nearby chains

Chain E
50S ribosomal protein L4
Chain L
50S ribosomal protein L15
Chain Q
50S ribosomal protein L20
Chain R
50S ribosomal protein L21

Coloring options:


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