J5_3BBX_002
3D structure
- PDB id
- 3BBX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 10 Å
Loop
- Sequence
- CGACUU*AGAC*GUUC*GC*GCGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 3BBX|1|B|C|587, 3BBX|1|B|G|669, 3BBX|1|B|A|670, 3BBX|1|B|U|1255
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_3BBX_002 not in the Motif Atlas
- Homologous match to J5_9DFE_004
- Geometric discrepancy: 0.3734
- The information below is about J5_9DFE_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.5
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
3BBX|1|B|C|584
3BBX|1|B|G|585
3BBX|1|B|A|586
3BBX|1|B|C|587
3BBX|1|B|U|588
3BBX|1|B|U|589
*
3BBX|1|B|A|668
3BBX|1|B|G|669
3BBX|1|B|A|670
3BBX|1|B|C|671
*
3BBX|1|B|G|809
3BBX|1|B|U|810
3BBX|1|B|U|811
3BBX|1|B|C|812
*
3BBX|1|B|G|1195
3BBX|1|B|C|1196
*
3BBX|1|B|G|1250
3BBX|1|B|C|1251
3BBX|1|B|G|1252
3BBX|1|B|A|1253
3BBX|1|B|A|1254
3BBX|1|B|U|1255
3BBX|1|B|G|1256
Current chains
- Chain B
- 23S ribosomal RNA
Nearby chains
- Chain E
- 50S ribosomal protein L4
- Chain L
- 50S ribosomal protein L15
- Chain Q
- 50S ribosomal protein L20
- Chain R
- 50S ribosomal protein L21
Coloring options: