J5_3CF5_007

3D structure

PDB id

3CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GCAAUCUCA*UC*GC*GUGAAUAGG*CGC

Length

25 nucleotides

Bulged bases

3CF5|1|X|G|1749, 3CF5|1|X|G|1754

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_3CF5_007 not in the Motif Atlas

Homologous match to J5_7A0S_005

Geometric discrepancy: 0.1784

The information below is about J5_7A0S_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_99177.2

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

11

Unit IDs

3CF5|1|X|G|1691
3CF5|1|X|C|1692
3CF5|1|X|A|1693
3CF5|1|X|A|1694
3CF5|1|X|U|1695
3CF5|1|X|C|1696
3CF5|1|X|U|1697
3CF5|1|X|C|1698
3CF5|1|X|A|1699
*
3CF5|1|X|U|1723
3CF5|1|X|C|1724
*
3CF5|1|X|G|1742
3CF5|1|X|C|1743
*
3CF5|1|X|G|1747
3CF5|1|X|U|1748
3CF5|1|X|G|1749
3CF5|1|X|A|1750
3CF5|1|X|A|1751
3CF5|1|X|U|1752
3CF5|1|X|A|1753
3CF5|1|X|G|1754
3CF5|1|X|G|1755
*
3CF5|1|X|C|1971
3CF5|1|X|G|1972
3CF5|1|X|C|1973

Current chains

Chain X

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain B

50S RIBOSOMAL PROTEIN L3

Chain H

50S RIBOSOMAL PROTEIN L14

Chain M

50S RIBOSOMAL PROTEIN L19