J5_3CME_006

3D structure

PDB id

3CME (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structure of CA and CCA-PHE-CAP-BIO Bound to the Large Ribosomal Subunit of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GCAAGUUAG*UG*UC*GUGACUCGG*CAC

Length

25 nucleotides

Bulged bases

3CME|1|0|G|1814, 3CME|1|0|G|1819

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_3CME_006 not in the Motif Atlas

Homologous match to J5_4V9F_006

Geometric discrepancy: 0.0567

The information below is about J5_4V9F_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_99177.1

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

10

Unit IDs

3CME|1|0|G|1752
3CME|1|0|C|1753
3CME|1|0|A|1754
3CME|1|0|A|1755
3CME|1|0|G|1756
3CME|1|0|U|1757
3CME|1|0|U|1758
3CME|1|0|A|1759
3CME|1|0|G|1760
*
3CME|1|0|U|1784
3CME|1|0|G|1785
*
3CME|1|0|U|1807
3CME|1|0|C|1808
*
3CME|1|0|G|1812
3CME|1|0|U|1813
3CME|1|0|G|1814
3CME|1|0|A|1815
3CME|1|0|C|1816
3CME|1|0|U|1817
3CME|1|0|C|1818
3CME|1|0|G|1819
3CME|1|0|G|1820
*
3CME|1|0|C|2029
3CME|1|0|A|2030
3CME|1|0|C|2031

Current chains

Chain 0

50S RIBOSOMAL RNA

Nearby chains

Chain B

50S ribosomal protein L3P

Chain K

50S ribosomal protein L14P

Chain P

50S ribosomal protein L19e