J5_3D0U_001

3D structure

PDB id

3D0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Lysine Riboswitch Bound to Lysine

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GAGG*CGAA*UG*UGU*GAGAGC

Length

19 nucleotides

Bulged bases

3D0U|1|A|A|153

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_94937.1

Basepair signature

cWW-cWW-tHS-tWH-cWW-cWW-cWW-cWW-F-F-cWW

Number of instances in this motif group

2

Unit IDs

3D0U|1|A|G|6
3D0U|1|A|A|7
3D0U|1|A|G|8
3D0U|1|A|G|9
*
3D0U|1|A|C|76
3D0U|1|A|G|77
3D0U|1|A|A|78
3D0U|1|A|A|79
*
3D0U|1|A|U|110
3D0U|1|A|G|111
*
3D0U|1|A|U|137
3D0U|1|A|G|138
3D0U|1|A|U|139
*
3D0U|1|A|G|150
3D0U|1|A|A|151
3D0U|1|A|G|152
3D0U|1|A|A|153
3D0U|1|A|G|154
3D0U|1|A|C|155

Current chains

Chain A

Lysine Riboswitch RNA

Nearby chains