J5_3D0X_001

3D structure

PDB id

3D0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the unbound lysine riboswitch

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GAGG*CGAA*UG*UGU*GAGAGC

Length

19 nucleotides

Bulged bases

3D0X|1|A|A|153

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_3D0X_001 not in the Motif Atlas

Homologous match to J5_3D0U_001

Geometric discrepancy: 0.156

The information below is about J5_3D0U_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_94937.1

Basepair signature

cWW-cWW-tHS-tWH-cWW-cWW-cWW-cWW-F-F-cWW

Number of instances in this motif group

2

Unit IDs

3D0X|1|A|G|6
3D0X|1|A|A|7
3D0X|1|A|G|8
3D0X|1|A|G|9
*
3D0X|1|A|C|76
3D0X|1|A|G|77
3D0X|1|A|A|78
3D0X|1|A|A|79
*
3D0X|1|A|U|110
3D0X|1|A|G|111
*
3D0X|1|A|U|137
3D0X|1|A|G|138
3D0X|1|A|U|139
*
3D0X|1|A|G|150
3D0X|1|A|A|151
3D0X|1|A|G|152
3D0X|1|A|A|153
3D0X|1|A|G|154
3D0X|1|A|C|155

Current chains

Chain A

RNA (161-MER)

Nearby chains