J5_3DIL_001

3D structure

PDB id

3DIL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermotoga maritima lysine riboswitch bound to lysine

Experimental method

X-RAY DIFFRACTION

Resolution

1.9 Å

Loop

Sequence

GAGG*CGAA*UG*UGU*GAGAGC

Length

19 nucleotides

Bulged bases

3DIL|1|A|A|164

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_94937.1

Basepair signature

cWW-cWW-tHS-tWH-cWW-cWW-cWW-cWW-F-F-cWW

Number of instances in this motif group

2

Unit IDs

3DIL|1|A|G|9
3DIL|1|A|A|10
3DIL|1|A|G|11
3DIL|1|A|G|12
*
3DIL|1|A|C|79
3DIL|1|A|G|80
3DIL|1|A|A|81
3DIL|1|A|A|82
*
3DIL|1|A|U|113
3DIL|1|A|G|114
*
3DIL|1|A|U|140
3DIL|1|A|G|141
3DIL|1|A|U|142
*
3DIL|1|A|G|161
3DIL|1|A|A|162
3DIL|1|A|G|163
3DIL|1|A|A|164
3DIL|1|A|G|165
3DIL|1|A|C|166

Current chains

Chain A

RNA (174-MER)

Nearby chains