J5_3DIS_001

3D structure

PDB id

3DIS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystallization of the Thermotoga maritima lysine riboswitch in free form

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAGG*CGAA*UG*UGU*GAGAGC

Length

19 nucleotides

Bulged bases

3DIS|1|A|A|81, 3DIS|1|A|A|164

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_3DIS_001 not in the Motif Atlas

Homologous match to J5_3DIL_001

Geometric discrepancy: 0.0596

The information below is about J5_3DIL_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_94937.1

Basepair signature

cWW-cWW-tHS-tWH-cWW-cWW-cWW-cWW-F-F-cWW

Number of instances in this motif group

2

Unit IDs

3DIS|1|A|G|9
3DIS|1|A|A|10
3DIS|1|A|G|11
3DIS|1|A|G|12
*
3DIS|1|A|C|79
3DIS|1|A|G|80
3DIS|1|A|A|81
3DIS|1|A|A|82
*
3DIS|1|A|U|113
3DIS|1|A|G|114
*
3DIS|1|A|U|140
3DIS|1|A|G|141
3DIS|1|A|U|142
*
3DIS|1|A|G|161
3DIS|1|A|A|162
3DIS|1|A|G|163
3DIS|1|A|A|164
3DIS|1|A|G|165
3DIS|1|A|C|166

Current chains

Chain A

RNA (174-MER)

Nearby chains