J5_3DJ2_001

3D structure

PDB id

3DJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystallization of the Thermotoga maritima lysine riboswitch bound to lysine, Tl+ Soak

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GAGG*CGAA*UG*UGU*GAGAGC

Length

19 nucleotides

Bulged bases

3DJ2|1|A|A|164

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_3DJ2_001 not in the Motif Atlas

Homologous match to J5_3DIL_001

Geometric discrepancy: 0.0278

The information below is about J5_3DIL_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_94937.1

Basepair signature

cWW-cWW-tHS-tWH-cWW-cWW-cWW-cWW-F-F-cWW

Number of instances in this motif group

2

Unit IDs

3DJ2|1|A|G|9
3DJ2|1|A|A|10
3DJ2|1|A|G|11
3DJ2|1|A|G|12
*
3DJ2|1|A|C|79
3DJ2|1|A|G|80
3DJ2|1|A|A|81
3DJ2|1|A|A|82
*
3DJ2|1|A|U|113
3DJ2|1|A|G|114
*
3DJ2|1|A|U|140
3DJ2|1|A|G|141
3DJ2|1|A|U|142
*
3DJ2|1|A|G|161
3DJ2|1|A|A|162
3DJ2|1|A|G|163
3DJ2|1|A|A|164
3DJ2|1|A|G|165
3DJ2|1|A|C|166

Current chains

Chain A

RNA (174-MER)

Nearby chains