J5_3HL2_001

3D structure

PDB id

3HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the human SepSecS-tRNASec complex

Experimental method

X-RAY DIFFRACTION

Resolution

2.81 Å

Loop

Sequence

GAUC*GU*AGC*GAG*CC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_3HL2_001 not in the Motif Atlas

Homologous match to J5_8G9Z_001

Geometric discrepancy: 0.2023

The information below is about J5_8G9Z_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_22280.1

Basepair signature

cWW-F-cWW-F-cWW-cWW-cWW-cWW

Number of instances in this motif group

2

Unit IDs

3HL2|1|E|G|7||A
3HL2|1|E|A|8||A
3HL2|1|E|U|9||A
3HL2|1|E|C|10||A
*
3HL2|1|E|G|25||A
3HL2|1|E|U|26||A
*
3HL2|1|E|A|44||A
3HL2|1|E|G|45||A
3HL2|1|E|C|46||A|A
*
3HL2|1|E|G|48||A
3HL2|1|E|A|49||A
3HL2|1|E|G|50||A
*
3HL2|1|E|C|64||A
3HL2|1|E|C|65||A

Current chains

Chain E

tRNASec

Nearby chains

Chain A

O-phosphoseryl-tRNA(Sec) selenium transferase

Chain D

O-phosphoseryl-tRNA(Sec) selenium transferase