J5_3I56_006
3D structure
- PDB id
- 3I56 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-crystal structure of Triacetyloleandomcyin Bound to the Large Ribosomal Subunit
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- GCAAGUUAG*UG*UC*GUGACUCGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 3I56|1|0|G|1814, 3I56|1|0|G|1819
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_3I56_006 not in the Motif Atlas
- Homologous match to J5_4V9F_006
- Geometric discrepancy: 0.0419
- The information below is about J5_4V9F_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.2
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 11
Unit IDs
3I56|1|0|G|1752
3I56|1|0|C|1753
3I56|1|0|A|1754
3I56|1|0|A|1755
3I56|1|0|G|1756
3I56|1|0|U|1757
3I56|1|0|U|1758
3I56|1|0|A|1759
3I56|1|0|G|1760
*
3I56|1|0|U|1784
3I56|1|0|G|1785
*
3I56|1|0|U|1807
3I56|1|0|C|1808
*
3I56|1|0|G|1812
3I56|1|0|U|1813
3I56|1|0|G|1814
3I56|1|0|A|1815
3I56|1|0|C|1816
3I56|1|0|U|1817
3I56|1|0|C|1818
3I56|1|0|G|1819
3I56|1|0|G|1820
*
3I56|1|0|C|2029
3I56|1|0|A|2030
3I56|1|0|C|2031
Current chains
- Chain 0
- 23S ribosomal RNA
Nearby chains
- Chain B
- 50S ribosomal protein L3P
- Chain K
- 50S ribosomal protein L14P
- Chain P
- 50S ribosomal protein L19e
Coloring options: