J5_3J6B_003
3D structure
- PDB id
- 3J6B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast mitochondrial large ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UUUA*UUUU*AU*AG*CGAAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 3J6B|1|A|U|1976, 3J6B|1|A|G|2694, 3J6B|1|A|A|2695, 3J6B|1|A|A|2696, 3J6B|1|A|U|2697
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_3J6B_003 not in the Motif Atlas
- Homologous match to J5_4WF9_007
- Geometric discrepancy: 0.0898
- The information below is about J5_4WF9_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
3J6B|1|A|U|1974
3J6B|1|A|U|1975
3J6B|1|A|U|1976
3J6B|1|A|A|1977
*
3J6B|1|A|U|2269
3J6B|1|A|U|2270
3J6B|1|A|U|2271
3J6B|1|A|U|2272
*
3J6B|1|A|A|2284
3J6B|1|A|U|2285
*
3J6B|1|A|A|2308
3J6B|1|A|G|2309
*
3J6B|1|A|C|2693
3J6B|1|A|G|2694
3J6B|1|A|A|2695
3J6B|1|A|A|2696
3J6B|1|A|U|2697
3J6B|1|A|A|2698
3J6B|1|A|A|2699
3J6B|1|A|A|2700
3J6B|1|A|A|2701
Current chains
- Chain A
- 21S ribosomal RNA
Nearby chains
- Chain B
- 54S ribosomal protein RML2, mitochondrial
- Chain J
- 54S ribosomal protein L10, mitochondrial
- Chain R
- 54S ribosomal protein L2, mitochondrial
- Chain S
- 54S ribosomal protein L24, mitochondrial
- Chain e
- E-site tRNA
Coloring options: