J5_3J6X_008
3D structure
- PDB id
- 3J6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- CGAG*CGUAA*UGAACGUAG*CGA*UAAGAG
- Length
- 27 nucleotides
- Bulged bases
- 3J6X|1|2S|U|719, 3J6X|1|2S|A|784, 3J6X|1|2S|G|785
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_3J6X_008 not in the Motif Atlas
- Homologous match to J5_8P9A_012
- Geometric discrepancy: 0.14
- The information below is about J5_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_56629.1
- Basepair signature
- cWW-F-F-tSS-F-cWW-cWW-F-F-cWW-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
3J6X|1|2S|C|675
3J6X|1|2S|G|676
3J6X|1|2S|A|677
3J6X|1|2S|G|678
*
3J6X|1|2S|C|702
3J6X|1|2S|G|703
3J6X|1|2S|U|704
3J6X|1|2S|A|705
3J6X|1|2S|A|706
*
3J6X|1|2S|U|713
3J6X|1|2S|G|714
3J6X|1|2S|A|715
3J6X|1|2S|A|716
3J6X|1|2S|C|717
3J6X|1|2S|G|718
3J6X|1|2S|U|719
3J6X|1|2S|A|720
3J6X|1|2S|G|721
*
3J6X|1|2S|C|749
3J6X|1|2S|G|750
3J6X|1|2S|A|751
*
3J6X|1|2S|U|782
3J6X|1|2S|A|783
3J6X|1|2S|A|784
3J6X|1|2S|G|785
3J6X|1|2S|A|786
3J6X|1|2S|G|787
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 53
- 60S ribosomal protein L13
- Chain 58
- 60S ribosomal protein L18
- Chain 61
- 60S ribosomal protein L21
- Chain 68
- 60S ribosomal protein L28
- Chain 69
- 60S ribosomal protein L29
- Chain 76
- 60S ribosomal protein L36
- Chain L4
- 60S ribosomal protein L4
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