J5_3J6Y_002
3D structure
- PDB id
- 3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 3J6Y|1|1S|A|93, 3J6Y|1|1S|C|424
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_3J6Y_002 not in the Motif Atlas
- Homologous match to J5_8C3A_020
- Geometric discrepancy: 0.1282
- The information below is about J5_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.4
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
3J6Y|1|1S|C|54
3J6Y|1|1S|A|55
3J6Y|1|1S|U|56
3J6Y|1|1S|G|57
*
3J6Y|1|1S|C|90
3J6Y|1|1S|G|91
3J6Y|1|1S|A|92
3J6Y|1|1S|A|93
3J6Y|1|1S|U|94
3J6Y|1|1S|G|95
3J6Y|1|1S|G|96
3J6Y|1|1S|C|97
*
3J6Y|1|1S|G|386
3J6Y|1|1S|A|387
3J6Y|1|1S|G|388
*
3J6Y|1|1S|C|409
3J6Y|1|1S|A|410
3J6Y|1|1S|C|411
*
3J6Y|1|1S|G|422
3J6Y|1|1S|G|423
3J6Y|1|1S|C|424
3J6Y|1|1S|A|425
3J6Y|1|1S|G|426
Current chains
- Chain 1S
- 18S ribosomal RNA
Nearby chains
- Chain 24
- 40S ribosomal protein S24
- Chain 63
- 60S ribosomal protein L23
- Chain S4
- 40S ribosomal protein S4
- Chain S6
- 40S ribosomal protein S6
- Chain S8
- 40S ribosomal protein S8
- Chain S9
- 40S ribosomal protein S9
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