J5_3J6Y_007
3D structure
- PDB id
- 3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUC*GC*GCAGAUC
- Length
- 23 nucleotides
- Bulged bases
- 3J6Y|1|2S|U|1436
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_3J6Y_007 not in the Motif Atlas
- Homologous match to J5_8C3A_002
- Geometric discrepancy: 0.1127
- The information below is about J5_8C3A_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3J6Y|1|2S|G|658
3J6Y|1|2S|G|659
3J6Y|1|2S|A|660
3J6Y|1|2S|G|661
3J6Y|1|2S|U|662
3J6Y|1|2S|C|663
*
3J6Y|1|2S|G|799
3J6Y|1|2S|G|800
3J6Y|1|2S|A|801
3J6Y|1|2S|C|802
*
3J6Y|1|2S|G|941
3J6Y|1|2S|U|942
3J6Y|1|2S|U|943
3J6Y|1|2S|C|944
*
3J6Y|1|2S|G|1375
3J6Y|1|2S|C|1376
*
3J6Y|1|2S|G|1431
3J6Y|1|2S|C|1432
3J6Y|1|2S|A|1433
3J6Y|1|2S|G|1434
3J6Y|1|2S|A|1435
3J6Y|1|2S|U|1436
3J6Y|1|2S|C|1437
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 53
- 60S ribosomal protein L13
- Chain 55
- 60S ribosomal protein L15
- Chain 68
- 60S ribosomal protein L28
- Chain 72
- 60S ribosomal protein L32
- Chain 8S
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain L4
- 60S ribosomal protein L4
Coloring options: