J5_3J78_012
3D structure
- PDB id
- 3J78 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.3 Å
Loop
- Sequence
- UUGA*UUUG*CA*UG*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 3J78|1|2S|G|2418, 3J78|1|2S|A|2799, 3J78|1|2S|G|2800, 3J78|1|2S|A|2801, 3J78|1|2S|A|2802
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_3J78_012 not in the Motif Atlas
- Homologous match to J5_8C3A_006
- Geometric discrepancy: 0.1668
- The information below is about J5_8C3A_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3J78|1|2S|U|2416
3J78|1|2S|U|2417
3J78|1|2S|G|2418
3J78|1|2S|A|2419
*
3J78|1|2S|U|2611
3J78|1|2S|U|2612
3J78|1|2S|U|2613
3J78|1|2S|G|2614
*
3J78|1|2S|C|2627
3J78|1|2S|A|2628
*
3J78|1|2S|U|2650
3J78|1|2S|G|2651
*
3J78|1|2S|C|2798
3J78|1|2S|A|2799
3J78|1|2S|G|2800
3J78|1|2S|A|2801
3J78|1|2S|A|2802
3J78|1|2S|A|2803
3J78|1|2S|A|2804
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 65
- 60S ribosomal protein L15
- Chain 71
- 60S ribosomal protein L21
- Chain 78
- 60S ribosomal protein L28
- Chain 79
- 60S ribosomal protein L29
- Chain 92
- 60S ribosomal protein L42
- Chain ET
- Transfer RNA; tRNA
- Chain L2
- 60S ribosomal protein L2
- Chain PT
- Transfer RNA; tRNA
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