J5_3J79_001
3D structure
- PDB id
- 3J79 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GGG*CGAUGAAG*UGAAUG*CA*UAC
- Length
- 22 nucleotides
- Bulged bases
- 3J79|1|C|U|42
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_3J79_001 not in the Motif Atlas
- Homologous match to J5_8P9A_010
- Geometric discrepancy: 0.1747
- The information below is about J5_8P9A_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_27223.1
- Basepair signature
- cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
3J79|1|A|G|20
3J79|1|A|G|21
3J79|1|A|G|22
*
3J79|1|C|C|39
3J79|1|C|G|40
3J79|1|C|A|41
3J79|1|C|U|42
3J79|1|C|G|43
3J79|1|C|A|44
3J79|1|C|A|45
3J79|1|C|G|46
*
3J79|1|C|U|105
3J79|1|C|G|106
3J79|1|C|A|107
3J79|1|C|A|108
3J79|1|C|U|109
3J79|1|C|G|110
*
3J79|1|C|C|118
3J79|1|C|A|119
*
3J79|1|C|U|144
3J79|1|C|A|145
3J79|1|C|C|146
Current chains
- Chain A
- 28S ribosomal RNA
- Chain C
- 5.8S ribosomal RNA
Nearby chains
- Chain 3
- 60S ribosomal protein uL29
- Chain P
- 60S ribosomal protein eL15
- Chain Y
- 60S ribosomal protein uL23
- Chain c
- 60S ribosomal protein eL37
- Chain e
- 60S ribosomal protein eL39
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