J5_3J79_005

3D structure

PDB id

3J79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUUA*UUUG*CA*UG*CUGAAAA

Length

19 nucleotides

Bulged bases

3J79|1|A|U|2711, 3J79|1|A|U|3158, 3J79|1|A|G|3159, 3J79|1|A|A|3160, 3J79|1|A|A|3161

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_3J79_005 not in the Motif Atlas

Homologous match to J5_8C3A_006

Geometric discrepancy: 0.2949

The information below is about J5_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J79|1|A|U|2709
3J79|1|A|U|2710
3J79|1|A|U|2711
3J79|1|A|A|2712
*
3J79|1|A|U|2950
3J79|1|A|U|2951
3J79|1|A|U|2952
3J79|1|A|G|2953
*
3J79|1|A|C|2966
3J79|1|A|A|2967
*
3J79|1|A|U|2989
3J79|1|A|G|2990
*
3J79|1|A|C|3157
3J79|1|A|U|3158
3J79|1|A|G|3159
3J79|1|A|A|3160
3J79|1|A|A|3161
3J79|1|A|A|3162
3J79|1|A|A|3163

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain 4

60S ribosomal protein eL29

Chain D

60S ribosomal protein uL2

Chain O

60S ribosomal protein uL15

Chain P

60S ribosomal protein eL15

Chain S

60S ribosomal protein eL18

Chain V

60S ribosomal protein eL21

Chain i

60S ribosomal protein eL44