J5_3J8G_004

3D structure

PDB id

3J8G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Electron cryo-microscopy structure of EngA bound with the 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

3J8G|1|B|U|1758, 3J8G|1|B|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_3J8G_004 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.1898

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

3J8G|1|B|G|1674
3J8G|1|B|C|1675
3J8G|1|B|A|1676
3J8G|1|B|A|1677
3J8G|1|B|A|1678
3J8G|1|B|A|1679
3J8G|1|B|U|1680
3J8G|1|B|G|1681
3J8G|1|B|G|1682
*
3J8G|1|B|C|1706
3J8G|1|B|G|1707
*
3J8G|1|B|U|1751
3J8G|1|B|C|1752
*
3J8G|1|B|G|1756
3J8G|1|B|A|1757
3J8G|1|B|U|1758
3J8G|1|B|A|1759
3J8G|1|B|C|1760
3J8G|1|B|C|1761
3J8G|1|B|A|1762
3J8G|1|B|G|1763
3J8G|1|B|C|1764
*
3J8G|1|B|G|1988
3J8G|1|B|G|1989
3J8G|1|B|C|1990

Current chains

Chain B

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain K

50S ribosomal protein L14

Chain P

50S ribosomal protein L19