J5_3J9W_003

3D structure

PDB id

3J9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AAG

Length

22 nucleotides

Bulged bases

3J9W|1|BA|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_3J9W_003 not in the Motif Atlas

Homologous match to J5_4WF9_001

Geometric discrepancy: 0.1536

The information below is about J5_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.1

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

3J9W|1|BA|C|47
3J9W|1|BA|G|48
3J9W|1|BA|A|49
3J9W|1|BA|U|50
3J9W|1|BA|G|51
3J9W|1|BA|A|52
3J9W|1|BA|A|53
3J9W|1|BA|G|54
*
3J9W|1|BA|C|115
3J9W|1|BA|G|116
3J9W|1|BA|A|117
3J9W|1|BA|A|118
3J9W|1|BA|U|119
3J9W|1|BA|G|120
*
3J9W|1|BA|C|129
3J9W|1|BA|A|130
*
3J9W|1|BA|U|149
3J9W|1|BA|A|150
3J9W|1|BA|U|151
*
3J9W|1|BA|A|178
3J9W|1|BA|A|179
3J9W|1|BA|G|180

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B6

50S ribosomal protein bL34

Chain BW

50S ribosomal protein uL23