J5_3J9W_005

3D structure

PDB id

3J9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UAG*CGUGC*GAA*UA*UA

Length

15 nucleotides

Bulged bases

3J9W|1|BA|A|578, 3J9W|1|BA|U|606

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_3J9W_005 not in the Motif Atlas

Homologous match to J5_5J7L_014

Geometric discrepancy: 0.0972

The information below is about J5_5J7L_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_43153.5

Basepair signature

cWW-cWW-cWW-F-cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

3J9W|1|BA|U|577
3J9W|1|BA|A|578
3J9W|1|BA|G|579
*
3J9W|1|BA|C|604
3J9W|1|BA|G|605
3J9W|1|BA|U|606
3J9W|1|BA|G|607
3J9W|1|BA|C|608
*
3J9W|1|BA|G|621
3J9W|1|BA|A|622
3J9W|1|BA|A|623
*
3J9W|1|BA|U|1301
3J9W|1|BA|A|1302
*
3J9W|1|BA|U|2046
3J9W|1|BA|A|2047

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B4

50S ribosomal protein bL32

Chain BM

50S ribosomal protein uL13

Chain BT

50S ribosomal protein bL20

Chain BU

50S ribosomal protein bL21

Chain BV

50S ribosomal protein uL22