J5_3JAQ_003
3D structure
- PDB id
- 3JAQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex in open conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 3JAQ|1|2|U|56, 3JAQ|1|2|A|93, 3JAQ|1|2|C|423
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_3JAQ_003 not in the Motif Atlas
- Homologous match to J5_8CRE_020
- Geometric discrepancy: 0.131
- The information below is about J5_8CRE_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_58574.1
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
3JAQ|1|2|C|54
3JAQ|1|2|A|55
3JAQ|1|2|U|56
3JAQ|1|2|G|57
*
3JAQ|1|2|C|90
3JAQ|1|2|G|91
3JAQ|1|2|A|92
3JAQ|1|2|A|93
3JAQ|1|2|U|94
3JAQ|1|2|G|95
3JAQ|1|2|G|96
3JAQ|1|2|C|97
*
3JAQ|1|2|G|385
3JAQ|1|2|A|386
3JAQ|1|2|G|387
*
3JAQ|1|2|C|408
3JAQ|1|2|A|409
3JAQ|1|2|C|410
*
3JAQ|1|2|G|421
3JAQ|1|2|G|422
3JAQ|1|2|C|423
3JAQ|1|2|A|424
3JAQ|1|2|G|425
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain E
- eS4
- Chain G
- eS6
- Chain I
- eS8
- Chain J
- uS4
- Chain Y
- eS24
- Chain q
- eIF3i
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