J5_3JBO_003
3D structure
- PDB id
- 3JBO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- CAAG*CGAACGGC*GAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 3JBO|1|A|A|56, 3JBO|1|A|A|95, 3JBO|1|A|C|430
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_3JBO_003 not in the Motif Atlas
- Homologous match to J5_8C3A_020
- Geometric discrepancy: 0.1237
- The information below is about J5_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.4
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
3JBO|1|A|C|54
3JBO|1|A|A|55
3JBO|1|A|A|56
3JBO|1|A|G|57
*
3JBO|1|A|C|92
3JBO|1|A|G|93
3JBO|1|A|A|94
3JBO|1|A|A|95
3JBO|1|A|C|96
3JBO|1|A|G|97
3JBO|1|A|G|98
3JBO|1|A|C|99
*
3JBO|1|A|G|392
3JBO|1|A|A|393
3JBO|1|A|G|394
*
3JBO|1|A|C|415
3JBO|1|A|A|416
3JBO|1|A|C|417
*
3JBO|1|A|G|428
3JBO|1|A|G|429
3JBO|1|A|C|430
3JBO|1|A|A|431
3JBO|1|A|G|432
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain 1
- 40S ribosomal protein eS24
- Chain AM
- 60S ribosomal protein uL14
- Chain E
- 40S ribosomal protein uS4
- Chain F
- 40S ribosomal protein eS4
- Chain H
- 40S ribosomal protein eS6
- Chain L
- 40S ribosomal protein eS8
Coloring options: