J5_3JCJ_010
3D structure
- PDB id
- 3JCJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UUUA*UUUG*CU*AG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 3JCJ|1|A|U|2076, 3JCJ|1|A|G|2428, 3JCJ|1|A|G|2429, 3JCJ|1|A|A|2430, 3JCJ|1|A|U|2431
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_3JCJ_010 not in the Motif Atlas
- Homologous match to J5_7A0S_007
- Geometric discrepancy: 0.1491
- The information below is about J5_7A0S_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
3JCJ|1|A|U|2074
3JCJ|1|A|U|2075
3JCJ|1|A|U|2076
3JCJ|1|A|A|2077
*
3JCJ|1|A|U|2243
3JCJ|1|A|U|2244
3JCJ|1|A|U|2245
3JCJ|1|A|G|2246
*
3JCJ|1|A|C|2258
3JCJ|1|A|U|2259
*
3JCJ|1|A|A|2281
3JCJ|1|A|G|2282
*
3JCJ|1|A|C|2427
3JCJ|1|A|G|2428
3JCJ|1|A|G|2429
3JCJ|1|A|A|2430
3JCJ|1|A|U|2431
3JCJ|1|A|A|2432
3JCJ|1|A|A|2433
3JCJ|1|A|A|2434
3JCJ|1|A|A|2435
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain B
- 50S ribosomal protein L2
- Chain K
- 50S ribosomal protein L15
- Chain V
- 50S ribosomal protein L27
- Chain W
- 50S ribosomal protein L28
- Chain a
- 50S ribosomal protein L33
- Chain c
- 50S ribosomal protein L35
- Chain v
- Transfer RNA; tRNA
Coloring options: