J5_3JCS_001
3D structure
- PDB id
- 3JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- AGG*CGUUGAAG*UGAACG*CG*CAU
- Length
- 22 nucleotides
- Bulged bases
- 3JCS|1|7|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_3JCS_001 not in the Motif Atlas
- Homologous match to J5_8P9A_010
- Geometric discrepancy: 0.192
- The information below is about J5_8P9A_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_01737.2
- Basepair signature
- cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
3JCS|1|1|A|18
3JCS|1|1|G|19
3JCS|1|1|G|20
*
3JCS|1|7|C|35
3JCS|1|7|G|36
3JCS|1|7|U|37
3JCS|1|7|U|38
3JCS|1|7|G|39
3JCS|1|7|A|40
3JCS|1|7|A|41
3JCS|1|7|G|42
*
3JCS|1|7|U|101
3JCS|1|7|G|102
3JCS|1|7|A|103
3JCS|1|7|A|104
3JCS|1|7|C|105
3JCS|1|7|G|106
*
3JCS|1|7|C|114
3JCS|1|7|G|115
*
3JCS|1|7|C|148
3JCS|1|7|A|149
3JCS|1|7|U|150
Current chains
- Chain 1
- 26S alpha ribosomal RNA
- Chain 7
- 5.8S ribosomal RNA
Nearby chains
- Chain 2
- Large subunit ribosomal RNA; LSU rRNA
- Chain M
- ribosomal protein L15e
- Chain V
- ribosomal protein L23
- Chain a
- ribosomal protein L29
- Chain j
- ribosomal protein L37e
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