J5_3JCS_004
3D structure
- PDB id
- 3JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UUGA*UUUG*UA*(OMU)(OMG)*CAGAAUA
- Length
- 19 nucleotides
- Bulged bases
- 3JCS|1|2|G|664, 3JCS|1|2|A|1238, 3JCS|1|2|G|1239, 3JCS|1|2|A|1240, 3JCS|1|2|A|1241, 3JCS|1|2|U|1242
- QA status
- Modified nucleotides: OMU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_3JCS_004 not in the Motif Atlas
- Homologous match to J5_8C3A_006
- Geometric discrepancy: 0.2915
- The information below is about J5_8C3A_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3JCS|1|2|U|662
3JCS|1|2|U|663
3JCS|1|2|G|664
3JCS|1|2|A|665
*
3JCS|1|2|U|1039
3JCS|1|2|U|1040
3JCS|1|2|U|1041
3JCS|1|2|G|1042
*
3JCS|1|2|U|1055
3JCS|1|2|A|1056
*
3JCS|1|2|OMU|1078
3JCS|1|2|OMG|1079
*
3JCS|1|2|C|1237
3JCS|1|2|A|1238
3JCS|1|2|G|1239
3JCS|1|2|A|1240
3JCS|1|2|A|1241
3JCS|1|2|U|1242
3JCS|1|2|A|1243
Current chains
- Chain 2
- 26S delta ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain A
- ribosomal protein L2
- Chain L
- ribosomal protein L15
- Chain M
- ribosomal protein L15e
- Chain P
- ribosomal protein L18e
- Chain S
- ribosomal protein L21e
- Chain n
- ribosomal protein L44e
Coloring options: