J5_3PIO_007

3D structure

PDB id

3PIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UA*UG

Length

20 nucleotides

Bulged bases

3PIO|1|X|U|49

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_3PIO_007 not in the Motif Atlas

Homologous match to J5_7A0S_001

Geometric discrepancy: 0.1545

The information below is about J5_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_75459.1

Basepair signature

cWW-F-cWW-cHW-tSH-cWW-tHH-tHS-cWW-cWW

Number of instances in this motif group

2

Unit IDs

3PIO|1|X|C|46
3PIO|1|X|G|47
3PIO|1|X|A|48
3PIO|1|X|U|49
3PIO|1|X|G|50
3PIO|1|X|A|51
3PIO|1|X|A|52
3PIO|1|X|G|53
*
3PIO|1|X|C|114
3PIO|1|X|G|115
3PIO|1|X|A|116
3PIO|1|X|A|117
3PIO|1|X|U|118
3PIO|1|X|G|119
*
3PIO|1|X|C|128
3PIO|1|X|A|129
*
3PIO|1|X|U|142
3PIO|1|X|A|143
*
3PIO|1|X|U|154
3PIO|1|X|G|155

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain Q

50S ribosomal protein L23