J5_3RG5_001

3D structure

PDB id

3RG5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Mouse tRNA(Sec)

Experimental method

X-RAY DIFFRACTION

Resolution

2 Å

Loop

Sequence

GAUC*GU*AGC*GAG*CC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_3RG5_001 not in the Motif Atlas

Homologous match to J5_3RG5_002

Geometric discrepancy: 0.2894

The information below is about J5_3RG5_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_22280.1

Basepair signature

cWW-F-cWW-F-cWW-cWW-cWW-cWW

Number of instances in this motif group

2

Unit IDs

3RG5|1|A|G|7
3RG5|1|A|A|8
3RG5|1|A|U|9
3RG5|1|A|C|10
*
3RG5|1|A|G|25
3RG5|1|A|U|26
*
3RG5|1|A|A|44
3RG5|1|A|G|45
3RG5|1|A|C|46
*
3RG5|1|A|G|47|||L
3RG5|1|A|A|48
3RG5|1|A|G|50
*
3RG5|1|A|C|64
3RG5|1|A|C|66

Current chains

Chain A

tRNA(Sec)

Nearby chains

Chain B

Selenocysteine transfer RNA