J5_4BTS_013
3D structure
- PDB id
- 4BTS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- THE CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH EIF1 AND EIF1A
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- CUUGU*AAAUAGC*GAAAUG*CAAU*AUAG
- Length
- 26 nucleotides
- Bulged bases
- 4BTS|1|CA|A|537
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4BTS_013 not in the Motif Atlas
- Homologous match to J5_8C3A_018
- Geometric discrepancy: 0.1149
- The information below is about J5_8C3A_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_19320.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
4BTS|1|CA|C|30
4BTS|1|CA|U|31
4BTS|1|CA|U|32
4BTS|1|CA|G|33
4BTS|1|CA|U|34
*
4BTS|1|CA|A|465
4BTS|1|CA|A|466
4BTS|1|CA|A|467
4BTS|1|CA|U|468
4BTS|1|CA|A|469
4BTS|1|CA|G|470
4BTS|1|CA|C|471
*
4BTS|1|CA|G|502
4BTS|1|CA|A|503
4BTS|1|CA|A|504
4BTS|1|CA|A|505
4BTS|1|CA|U|506
4BTS|1|CA|G|507
*
4BTS|1|CA|C|536
4BTS|1|CA|A|537
4BTS|1|CA|A|538
4BTS|1|CA|U|539
*
4BTS|1|CA|A|586
4BTS|1|CA|U|587
4BTS|1|CA|A|588
4BTS|1|CA|G|589
Current chains
- Chain CA
- 18S ribosomal RNA
Nearby chains
- Chain B9
- 40S RIBOSOMAL PROTEIN RPS31E
- Chain CD
- 40S RIBOSOMAL PROTEIN RPS9E
- Chain CL
- 40S RIBOSOMAL PROTEIN S12
- Chain CX
- 40S RIBOSOMAL PROTEIN RPS30E
Coloring options: