J5_4CSU_004

3D structure

PDB id

4CSU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of the 50S ribosome subunit bound with ObgE

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

4CSU|1|B|G|1763

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4CSU_004 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.2761

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4CSU|1|B|G|1674
4CSU|1|B|C|1675
4CSU|1|B|A|1676
4CSU|1|B|A|1677
4CSU|1|B|A|1678
4CSU|1|B|A|1679
4CSU|1|B|U|1680
4CSU|1|B|G|1681
4CSU|1|B|G|1682
*
4CSU|1|B|C|1706
4CSU|1|B|G|1707
*
4CSU|1|B|U|1751
4CSU|1|B|C|1752
*
4CSU|1|B|G|1756
4CSU|1|B|A|1757
4CSU|1|B|U|1758
4CSU|1|B|A|1759
4CSU|1|B|C|1760
4CSU|1|B|C|1761
4CSU|1|B|A|1762
4CSU|1|B|G|1763
4CSU|1|B|C|1764
*
4CSU|1|B|G|1988
4CSU|1|B|G|1989
4CSU|1|B|C|1990

Current chains

Chain B

23S RRNA

Nearby chains

Chain D

50S RIBOSOMAL PROTEIN L3

Chain K

50S RIBOSOMAL PROTEIN L14

Chain P

50S RIBOSOMAL PROTEIN L19