J5_4CSU_006
3D structure
- PDB id
- 4CSU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of the 50S ribosome subunit bound with ObgE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.5 Å
Loop
- Sequence
- UUUA*UUUG*CU*AG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 4CSU|1|B|U|2076, 4CSU|1|B|G|2428, 4CSU|1|B|G|2429, 4CSU|1|B|A|2430, 4CSU|1|B|U|2431, 4CSU|1|B|A|2432, 4CSU|1|B|A|2433
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4CSU_006 not in the Motif Atlas
- Homologous match to J5_7A0S_007
- Geometric discrepancy: 0.2104
- The information below is about J5_7A0S_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.1
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
4CSU|1|B|U|2074
4CSU|1|B|U|2075
4CSU|1|B|U|2076
4CSU|1|B|A|2077
*
4CSU|1|B|U|2243
4CSU|1|B|U|2244
4CSU|1|B|U|2245
4CSU|1|B|G|2246
*
4CSU|1|B|C|2258
4CSU|1|B|U|2259
*
4CSU|1|B|A|2281
4CSU|1|B|G|2282
*
4CSU|1|B|C|2427
4CSU|1|B|G|2428
4CSU|1|B|G|2429
4CSU|1|B|A|2430
4CSU|1|B|U|2431
4CSU|1|B|A|2432
4CSU|1|B|A|2433
4CSU|1|B|A|2434
4CSU|1|B|A|2435
Current chains
- Chain B
- 23S RRNA
Nearby chains
- Chain 0
- 50S RIBOSOMAL PROTEIN L28
- Chain 4
- 50S RIBOSOMAL PROTEIN L33
- Chain C
- 50S RIBOSOMAL PROTEIN L2
- Chain L
- 50S RIBOSOMAL PROTEIN L15
- Chain Y
- 50S RIBOSOMAL PROTEIN L27
Coloring options: